Rubiales also resigned his position as Vice President of UEFA's Executive Committee.
Luis Rubiales has resigned as President of the Spanish Football Federation.
It comes following calls for him to step down after he kissed Jenni Hermoso in the aftermath of Spain's World Cup triumph last month.
Rubiales has also resigned his position as Vice President of UEFA's Executive Committee.
Spain forward Jenni Hermoso filed a criminal complaint last week, which led to prosecutors filing a case with Spain's top court against Rubiales.
He faces charges of sexual assault and coercion for his conduct after last month's Women's World Cup final, which Spain won 1-0 against England.

New York City Defender Kevin O'Toole In Ireland Squad For Final World Cup Qualifiers
The Ireland Team Have Been Named For Their Game Against Japan
Thursday Morning Sports Update
Tipperary Have Seven Players Included On This Year's PwC Hurling All-Star Team
Ellistown's Michael Noonan Scores 1 of 4 Goals To Beat Panama In The Under-17 World Cup Campaign
Ireland U17's Make History As They Play In Today's FIFA U17 World Cup
Wednesday Morning Sports Update
Kildare Primary Schools Soccer Finals Results